PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G419300.1
Common NameB456_009G419300, LOC105768132
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family S1Fa-like
Protein Properties Length: 83aa    MW: 9132.85 Da    PI: 10.4756
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G419300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA137.82.5e-431782570
                S1FA  5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                        ++eakG+nPGlivllvvgglll+flvgny+ly yaqk+lPPrkkkP+skkk+k+e+lkqGv++PGe
  Gorai.009G419300.1 17 QTEAKGFNPGLIVLLVVGGLLLTFLVGNYVLYSYAQKTLPPRKKKPISKKKMKKERLKQGVSAPGE 82
                        68***************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190130.0021582No hitNo description
PfamPF046896.0E-411882IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MSDEFEFADK GSKIIYQTEA KGFNPGLIVL LVVGGLLLTF LVGNYVLYSY AQKTLPPRKK  60
KPISKKKMKK ERLKQGVSAP GE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443340.11e-52PREDICTED: DNA-binding protein S1FA-like
SwissprotQ7XLX64e-19S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBLA0A0D2U3H21e-52A0A0D2U3H2_G
STRINGPOPTR_0016s08890.11e-22(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28232769
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]